➞ Publikacje ➞ 2006

2006

  1. Maszkowski Rafał Inny świat – obraz Żydów w Radiu Maryja, KWARTALNIK HISTORII ŻYDÓW – JEWISH HISTORY QUARTERLY, 2006, s. 669-687
  2. Trylska Joanna Flap opening dynamics in HIV-1 protease explored with a coarse-grained model MMS06: Methods of Molecular Simulations. Proceedings 20-22.09.2006, Feidelberg, Heidelberg, Germany, IWR, 2006
  3. Trylska Joanna, Hamacher Kay, Brooks, III Charles, McCammon J. Andrew Computational Studies of the Assembly of the Small Ribosomal Subunit Workshop on the Structure and Function of Biomolecules II Proceedings, Będlewo, May11-13, 2006, Europe, European Physical Society, 2006
  4. Rudnicki Witold, Kierczak Marcin, Koronacki Jacek, Komorowski Jan A Statistical Method for Determining Importance of Variables in an Information System, Lecture Notes in Computer Science, 2006, 4259, s. 557-566
  5. Sonechkin Dmitry, Brojewski Remigiusz, Goncharenko Alexander, Ivashchenko Nadeżda, Jakubiak Bogumił Towards the numerical monthly weather forecasting for Eastern Europe. Order in the atmospheric low-fequency chaos., PAPERS ON GLOBAL CHANGE IGBP, 2006, 13, s. 19-28
  6. Jakubiak Bogumił Comparison of the forecast background errors for nested grids in COAMPS Joint COST Avtion 731 and NetFAM “Uncertainty in High-Resolution Meteorological and Hydrological Models”, Vilnius, Lithuania, 26-28 April 2006, http://www.meteo.lt/, 2006
  7. Plewczyński Dariusz, Spieser Stephane, Koch Uwe Assessing Different Classification Methods For Virtual Screening, Journal of Chemical Information and Modeling, 2006, 46, s. 1098-1106
  8. Holm Liisa, Kääriäinen Sakari, Wilton Chris, Plewczyński Dariusz Using Dali – structural comparision of proteins CURRENT PROTOCOLS IN BIOINFORMATICS, X, WILEY, InterSience, 2006
  9. Steczkiewicz Kamil, Kinch Lisa, Grishin Nick, Rychlewski Leszek, Ginalski Krzysztof Eukaryotic Domain of Unknown Function DUF738 Belongs to Gcn5-related N-acetyltransferase Superfamily, Cell Cycle, 2006, 5, s. 2927-2930
  10. Łodziana Zbigniew, Piechota Jacek Ab initio thermodynamic properties of point defects and O-vacancy diffusion in Mg spinels, PHYSICAL REVIEW B, 2006, 74, s. 1-11
  11. Hamacher Kay, Trylska Joanna, McCammon J.A. Assembling the small ribosomal subunit in silico: A novel approach to determine binding interdependencies, ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 231, s. 1
  12. Trylska Joanna, McCammon J.A., Brooks C Exploring the assembly of the 30S ribosomal subunit, ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 231, s. 1
  13. Konecny Robert, Trylska Joanna, Tama Florence, Zhang Deqiang, Baker Nathan, Brooks, III Charles, McCammon J. Electrostatic Properties of Cowpea Chlorotic Mottle Virus and Cucumber Mosaic Virus Capsids, BIOPOLYMERS, 2006, 82, s. 106-120
  14. Hamacher Kay, Trylska Joanna, McCammon J Dependency Map of Proteins in the Small Ribosomal Subunit, PLoS Computational Biology, 2006, 2, s. 0080-0087
  15. Minh David, Chang Chia-en, Trylska Joanna, Tozzini Valentina, McCammon J The Influence of Macromolecular Crowding on HIV-1 Protease Internal Dynamics, JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128, s. 6006-6007
  16. Chang Chia-en, Shen Tongye, Trylska Joanna, Tozzini Valentina, McCammon J. Gated Binding of Ligands to HIV-1 Protease: Brownian Dynamics Simulations in a Coarse-Grained Model, BIOPHYSICAL JOURNAL, 2006, 90, s. 3880-3885
  17. Yang Grace, Trylska Joanna, Tor Yitzhak, McCammon J. Binding of Aminoglycosidic Antibiotics to the Oligonucleotide A-Site Model and 30S Ribosomal Subunit: Poisson-Boltzmann Model, Thermal Denaturation, and Fluorescence Studies, JOURNAL OF MEDICINAL CHEMISTRY, 2006, 49, s. 5478-5490
  18. Won Han Gye, Sri Krishna S, Schwarzenbacher Robert, McMullan Daniel, Ginalski Krzysztof Crystal Structure of the ApbE Protein (TM1553) from Thermotoga maritima at 1.58 A Resolution, PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2006, 64, s. 1083-1090
  19. Ginalski Krzysztof, Godzik Adam, Rychlewski Leszek Novel SARS Unique AdoMet-Dependent Methyltransferase, Cell Cycle, 2006, 5, s. 2414-2416
  20. Wiślicki Wojciech Autonomous Tools for GRID Management, Monitoring and Optimization – Design and Development Proposal, Warszawa, ICM, Wojciech Wiślicki, ICM, 2006
  21. Waniewski Jacek mathematical modeling of fluid and solute transport in hemodialysis and peritoneal dialysis, JOURNAL OF MEMBRANE SCIENCE, 2006, 274, s. 24-37
  22. Kniżewski Łukasz, Ginalski Krzysztof DUF 1613 is a Novel Family of Eucaryotic AdoMet-Dependent Methyltransferases, Cell Cycle, 2006, 5, s. 1580-1582
  23. Kniżewski Łukasz, Kinch Lisa, Grishin Nick, Rychlewski Leszek, Ginalski Krzysztof Human Herpesvirus 1 UL24 Gene Encodes a Potential PD-(D/E)XK Endonuclease, JOURNAL OF VIROLOGY, 2006, 80, s. 2575-2577
  24. Ginalski Krzysztof Comparative modeling for protein structure prediction, CURRENT OPINION IN STRUCTURAL BIOLOGY, 2006, 16, s. 1-6
  25. Kinch Lisa, Ginalski Krzysztof, Grishin Nick Site-2 protease regulated intramembrane proteolysis: Sequence homologs suggest an acient signaling cascade, PROTEIN SCIENCE, 2006, 15, s. 84-93
  26. Brojewski Remigiusz, Jakubiak Bogumił, Jasiński Janusz Impact of the surface temperature and the vertical shear of zonal wind on the dynamics of a simple two-layer model of the atmosphere., Acta Geophysica, 2006, 1, s. 1-1
  27. Grochala Wojciech, Grochala Wojciech s a Non–Transition Element Nitride Ferromagnet Ever Achievable? Indication of the N–N Pairing Instability, Collection of Czechoslovak Chemical Communications, 2006, 71, s. 1525-1531
  28. Rakowski Franciszek, Grochowski Paweł, Liwo Adam, Scheraga Harold Symplectic Algorithms of Molecular Dynamics. An Application to the United-Residue Model NIC Workshop, From Computational Biophysics to Systems Biology (CBSB06), John von Neumann Institute for Computing, Juelich, J. Meinke, O. Zimmermann, S. Mohanty, U.H.E. Hansmann, 2006
  29. Benedyczak K., Nowiński A., Nowiński K., Bała P. Real-time visualization in the grid using UNICORE middleware, Lecture Notes in Computer Science, 2006, 3911, s. 608-615
  30. Grochala Wojciech, Grochala Wojciech Is a Non-Transition Element Nitride Ferromagnet Ever Achievable? Indication of the N-N Pairing Instability, Collection of Czechoslovak Chemical Communications, 2006, 71, s. 1525-1531
  31. Grochala Wojciech, Grochala Wojciech Small changes, big consequences, NATURE MATERIALS, 2006, 5, s. 513-514
  32. Grochala Wojciech, Grochala Wojciech Plasticity of the coordination sphere of Ag2+, PHYSICA STATUS SOLIDI B-BASIC SOLID STATE PHYSICS, 2006, 243, s. 81-83
  33. Grochala Wojciech, Grochala Wojciech On similarities and differences in electronic structure between Cu(II)/O2– and Ag(II)/F1– infinite layer compounds, SCRIPTA MATERIALIA, 2006, 55, s. 811-814
  34. Maj Łukasz, Grochala Wojciech, Grochala Wojciech Theoretical Design of Catalysts for the Heterolytic Splitting of H2, ADVANCED FUNCTIONAL MATERIALS, 2006, 16, s. 2061-2076
  35. Martinez-Canales M, Bergara A, Feng J, Grochala Wojciech, Grochala Wojciech Pressure induced metallization of German, JOURNAL OF PHYSICS AND CHEMISTRY OF SOLIDS, 2006, 67, s. 2095-2099
  36. Jaroń Tomasz, Grochala Wojciech, Grochala Wojciech, Hoffmann Roald Prediction of thermodynamics stability and electronic structure of novel ternary lanthanide hydrides, JOURNAL OF MATERIALS CHEMISTRY, 2006, 16, s. 1154-1160
  37. Grochala Wojciech, Grochala Wojciech Remarks on catalytic reduction of CO2, H+ and H2 by monovalent Ni, PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2006, 8, s. 1340-1345
  38. Grzelak Janusz, Batorski Dominik, Baranowska Anna, Grabowska Izabela, Kotowska Irena, Łagodziński Wiesław, Muras Magdalena, Strzelecki Paweł, Szumlicz Tadeusz, Tymowska Katarzyna Diagnoza społeczna 2005, Czapiński Janusz, Panek Tomasz , Warszawa, VizjaPress&IT, 2006
  39. Lampidis Theodore, Kurtoglu Metin, Maher Johnathan, Liu Huaping, Krishan Awtar, Sheft Valerie, Szymanski Slawomir, Fokt Izabela, Rudnicki Witold, Ginalski Krzysztof, Lesyng Bogdan, Lesyng Bogdan, Priebe Waldemar Efficacy of 2-halogen substituted D-glucose analogs in blocking glycolysis and killing “hypoxic tumor cells”, CANCER CHEMOTHERAPY AND PHARMACOLOGY, 2006, 58, s. 725-734
  40. Zhivkov Petar, Foryś Urszula, Waniewski Jacek Anti-tumor immunity and tumor anti-immunuty in a mathematical model of tumor immunotherapy, JOURNAL OF BIOLOGICAL SYSTEMS, 2006, 14, s. 13-30
  41. Walewski Łukasz, Krachtus D, Fischer S, Smith J, Bała Piotr, Lesyng Bogdan SCC-DFTB Energy Barriers for Single and Double Proton Transfer Processes in the Model Molecular Systems Malonaldehyde and Porphycene, International Journal of Quantum Chemistry, 2006, 106, s. 636-640
  42. Rakowski Franciszek, Grochowski Paweł, Lesyng Bogdan, Liwo Adam, Scheraga Harold Sympletic Algorithms of Molecular Dynamics. An Application to the United-Residue Model. NIC Workshop 2006 from Computational Biophysics to Systems Biology 2006, Jülich, Germany, NIC-Directors, 2006
  43. Gruziel Magdalena, Rudnicki Witold, Lesyng Bogdan From Microscopic Monte-Carlo Simulations to Macroscopic Solvation Models NIC Workshop, From Computational Biophysics to Systems Biology (CBSB06), June 6-9, 2006, Juelich, Germany, NIC Directors, 2006
  44. Rakowski Franciszek, Grochowski Paweł, Lesyng Bogdan, Liwo Adam, Scheraga Harold Implementation of a symplectic multiple-time-step molecular dunamics algorithm, based on the united-residue mesoscopic potential energy function, JOURNAL OF CHEMICAL PHYSICS, 2006, 125, s. 1-10
  45. Społeczna przestrzeń internetu, Marody Mirosława, Nowak Andrzej, Batorski Dominik , Warszawa, Academica, 2006
  46. Górecki Adam, Górecki Adam, Trylska Joanna, Lesyng Bogdan Causality of Rare Events from Molecular Dynamics Simulations Workshop on the Structure and Function of Biomolecules II Proceedings, Będlewo, May11-13, 2006, Europe, European Physical Society, 2006
  47. Górecki Adam, Trylska Joanna, Lesyng Bogdan, Lesyng Bogdan Causality Relations in Molecular Dynamics Investigated with Multi-Variable Autoregressive Model, Europhysics Letters, 2006, 75, s. 503-509
  48. Górecki Adam, Bała Piotr, Lesyng Bogdan Parallelization of the Quantum Dynamics Code for Cluster Architecture and its Applications to the Gross-Pitaevskii Equation, International Journal of Quantum Chemistry, 2006, 106, s. 664-669
  49. Kmieć Piotr, Kalinowski Jarosław, Lesyng Bogdan Generalized Born and Nonpolar Models in Solvation Free Energies NIC Workshop, From Computational Biophysics to Systems Biology (CBSB06), Juelich, Germany, NIC Directors, 2006
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