Publikacje 2007

  1. Radomski Jan P. , Slonimski Piotr P. , Primary sequences of proteins from complete genomes display a singular periodicity: Alignment-free N-gram analysis, COMPTES RENDUS BIOLOGIES, 2007, 330, s. 33-48
  2. Romanowski Zbigniew , A B-spline finite element solution of the Kohn–Sham equation for an atom, ACTA ASTRONOMICA, 2007, 16, s. 1-14
  3. Romanowski Zbigniew , Krukowski Stanisław , Transformation of complex spherical harmonics under rotations, Journal of Physics A-Mathematical and Theoretical, 2007, 40, s. 15071-15082
  4. Voltz Karine , Wocjan Tomasz , Klenin Konstantin , Trylska Joanna , Tozzini Valentina , Kurkal Vandana , Smith Jeremy , Langowski Jörg , DNA dynamics on the nucleosome simulated by coarse-grained models, BIOPHYSICAL JOURNAL, 2007, suppl S, s. 540
  5. Trylska Joanna , Binding pathways of ligands to HIV-1 protease W: Biological Diffusion and Brownian Dynamics Brainstorm, 26-29 March 2007, Heidelberg, Germany , Heidelberg, 2007
  6. Plewczyński Dariusz , Slabinski Leszek , Tkacz Adrian , Kajan Laszlo , Holm Liisa , Ginalski Krzysztof , Rychlewski Leszek , The RPSP: Web server for prediction of signal peptides, POLYMER, 2007, 18, s. 5493-5496
  7. Białek E , Jakubowski W , Szczepanik A , Maryniak R , Prochorec-Sobiesze M , Bilski R , Szopiński Kazimierz , Vascular pattern in superficial lymph nodes involved by lymphoma – a detailed sonographic analysis, Journal of Ultrasound, 2007, 10, s. 128
  8. Szopiński Kazimierz , Mróz C , Przelaskowski A , Mlosek R , Sielżucka J , Słapa R , A new method of merging and reviewing of 3D ultrasound data sets - application in breast and thyroid sonography, European Radiology Supplements, 2007, 17, s. 178
  9. Krukowski Stanisław , Grzegorzy Izabella , Bockowski Michał , Łucznik Boleslaw , Wróblewski Mirosław , Porowski Sylwester , Adsorption and dissolution of nitrogen in lithium—QM DFT investigation, Journal of Crystal Growth, 2007, 304, s. 299-309
  10. Plewczyński Dariusz , How to estimate the size of Druggable Human Genome, ADVANCES IN CHEMINFORMATICS, 2007, 1, s. 11-19
  11. Plewczyński Dariusz , Hoffmann Marcin , von Grotthuss Marcin , Ginalski Krzysztof , Rychlewski Leszek , In Silico Prediction of SARS Protease Inhibitors by Virtual High Throughput Screening, Chemical Biology & Drug Design, 2007, 69, s. 269-279
  12. Wyrwicz Lucjan , Koczyk Grzegorz , Rychlewski Leszek , Plewczyński Dariusz , ProteinSplit: splitting of multi-domain proteins using prediction of ordered and disordered regions in protein sequences for virtual structural genomics, JOURNAL OF PHYSICS-CONDENSED MATTER, 2007, 19, s. 1-8
  13. Plewczyński Dariusz , Hoffmann Marcin , Kniżewski Łukasz , Rychlewski Leszek , Eitner Krystian , Ginalski Krzysztof , Modelling of potentially promising SARS protease inhibitors, JOURNAL OF PHYSICS-CONDENSED MATTER, 2007, 19, s. 1-18
  14. Ito Akio , Kenmochi Nobuyuki , Niezgódka Marek , Phase Separation Model of Penrose-Fife Type With Signorini Boundary Condition, Advances in Mathematical Sciences and Applications, 2007, 17, s. 337-356
  15. Krukowski Stanisław , Kempisty Paweł , Strąk P. , Nowak G. , Czarnecki R. , Leszczynski M. , Suski T. , Bockowski M. , Grzegory I. , Modelling the growth of nitrides in ammonia-rich environment, CRYSTAL RESEARCH AND TECHNOLOGY, 2007, 42, s. 1281-1290
  16. Strąk Paweł , Krukowski Stanisław , Molecular nitrogen-N2 properties: The intermolecular potential and the equation of state, JOURNAL OF CHEMICAL PHYSICS, 2007, 126, s. 194501-194511
  17. Załuska-Kotur Magdalena , Krukowski Stanisław , Łusakowski Andrzej , Turski Łukasz , Domain growth in the interacting adsorbate: Nonsymmetric particle jump model, PHYSICAL REVIEW B, 2007, 75, s. 1-6
  18. Romanowski Zbigniew , Numerical Solution of Kohn-Sham Equation for Atom, ACTA PHYSICA POLONICA B, 2007, 38, s. 3263-3286
  19. Sot Robert , Piechota Jacek , First Principles Study of Al(100) Twisted Interfaces, Solid State Phenomena, 2007, 129, s. 131-136
  20. Wróbel Jan , Piechota Jacek , Erratum: Structural properties of ZnO polymorphs, PHYSICA STATUS SOLIDI B-BASIC SOLID STATE PHYSICS, 2007, 244, s. 4688-4690
  21. Dikiy Alexander , Novoselov Sergey , Fomenko Dmitri , Sengupta Aniruddha , Carlson Bradley , Cerny Ronald , Ginalski Krzysztof , Grishin Nick , Hatfield Dolph , Gladyshev Vadim , SelT, SelW, SelH, and Rdx12: Genomics and Molecular Insights into the Functions of Selenoproteins of a Novel Thioredoxin-like Family, Biochemistry, 2007, 46, s. 6871-6882
  22. Kniżewski Łukasz , Kinch Lisa , Grishin Nick , Rychlewski Leszek , Ginalski Krzysztof , Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches, BMC STRUCTURAL BIOLOGY, 2007, 7, s. 1-9
  23. Kniżewski Łukasz , Ginalski Krzysztof , Bacterial DUF199/COG1481 Proteins Including Sporulation Regulator WhiA are Distant Homologs of LAGLIDADG Homing Endonucleases that Retained Only DNA Binding, Cell Cycle, 2007, 6, s. 1666-1670
  24. Gokieli Ryszard , Nawrocki Krzysztof , Padee Adam , Stojda Dorota , Wawrzyniak Karol , Wiślicki Wojciech , Polish Grid Infrastructure for Science and Research W: Proceedings of IEEE Eurocon 2007 International Conferenceom 'Computer as a Tool' Warsaw, September 9-12 , ?, IEE, 2007
  25. Trylska Joanna , Tozzini Valentina , Chang Chia-en , McCammon J. Andrew , HIV-1 Protease Substrate Binding and Product Release Pathways Explored with Coarse-Grained Molecular Dynamics, BIOPHYSICAL JOURNAL, 2007, 92, s. 4179-4187
  26. Tozzini Valentina , Trylska Joanna , Chang Chia-en , McCammon J. Andrew , Flap Opening Dynamics in HIV-1 Protease Explored with a Coarse-Grained Model, JOURNAL OF STRUCTURAL BIOLOGY, 2007, 157, s. 606-615
  27. Chang Chia-en , Trylska Joanna , Tozzini Valentina , McCammon J. Andrew , Binding Pathways of Ligands to HIV-1 Protease: Coarse-grained and Atomistic Simulations, Chemical Biology & Drug Design, 2007, 69, s. 5-13
  28. Szopiński Kazimierz , Mlosek R. , Mróz Cezary , Przelaskowski Artur , Sielużycka Joanna , Whole-breast ultrasound documenting the total volume of the breast and axillary region - a feasibility study., ULTRASONOGRAFIA, 2007, 31, s. 47-52
  29. Plewczyński Dariusz , Tkacz Adrian , AutoMotif Server: A Computational Protocol for Identification of Post-Translational Modifications in Protein Sequences., Nature Protocols, 2007, 2, s. 1
  30. Plewczyński Dariusz , von Grotthuss Marcin , Spieser Stephane , Rychlewski Leszek , Wyrwicz Lucjan , Ginalski Krzysztof , Koch Uwe , Target Specific Compound Identification Using a Support Vector Machine, COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2007, 10, s. 189-196
  31. Bała Piotr , Chemomentum - Grid environment to enable research in computational chemistry, ACTA ASTRONOMICA, 2007, 54, s. 60
  32. Chlebiej Michał , Nowiński Krzysztof , Ścisło Piotr , Bała Piotr , Reconstruction of Heart Motion from 4D Echocardiographic Images, Lecture Notes in Computer Science, 2007, 4673, s. 245-252
  33. Chlebiej Michał , Nowiński Krzysztof , Ścisło Piotr , Bała Piotr , Heart Motion Visualization Tools for 4D Echocardiographic Images, Journal of Medical Informatics & Technologies, 2007, 11, s. 177-184
  34. Tkacz Adrian , Rychlewski Leszek , Uva Paolo , Plewczyński Dariusz , Supervised Classification of Genes and Biological Samples W: DNA Microarrays. Current Applications , Great Britain, Horizon Bioscience, 2007
  35. Mróz C , Przelaskowski A , Szopiński Kazimierz , Wizualizacja 3W badań USG tarczycy: redukcja szumu speklowego i ekstrakcja cech diagnostycznych W: Materiały konferencyjne: II Ogólnopolska Konferencja-Sympozjum Inżynieria Biomedyczna i Telemedycyna Warszawa 7 września 200 , Warszawa, 2007
  36. Mróz C , Przelaskowski A , Radecki L , Szopiński Kazimierz , Obrazowanie sutka i tarczycy z wykorzystaniem ultrasonografii trójwymiarowej W: Materiały konferencyjne: XV Krajowa Konferencja Biocybernetyki i Inżynierii Biomedycznej. Wrocław 12-15 września 2007 , Wrocław, 2007
  37. Grochala Wojciech , Atypical compounds of gases, which have been called 'noble', CHEMICAL SOCIETY REVIEWS, 2007, 36, s. 1632-1655
  38. Grochala Wojciech , Stabilization of WVI in Environment via Acid/Base Reactions, and General Route to Layered Transition Metal Nitrides, Polish Journal of Chemistry, 2007, 81, s. 613-620
  39. Benedyczak Krzysztof , Nowiński Aleksander , Nowiński Krzysztof , Bała Piotr , UniGrids Streaming Framework: Enabling Streaming for the New Generation of Grids, Lecture Notes in Computer Science, 2007, 4699, s. 809-818
  40. Sot Robert , Gokieli Maria , Garbacz Halina , Kurzydłowski Krzysztof , Computational study of the equilibrium concentrations of point defects in B2-RuAl, Inżynieria Materiałowa, 2007, 28, s. 463-467
  41. Grochala Wojciech , Grochala Wojciech , Hoffmann Roald , Feng Ji , Ashcroft Neil , The Chemical Imaginationa at Work in Very Tight Places, ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2007, 46, s. 3620-3642
  42. Jaroń Tomasz , Grochala Wojciech , Grochala Wojciech , Hoffmann Roald , Towards superconductivity in hydrides: computational studies of two hypothetical ternary compounds, Yb^{II}BeH_4 and Cs_3 Yb{III}H_6, JOURNAL OF MOLECULAR MODELING, 2007, 13, s. 769-774
  43. Grochala Wojciech , Grochala Wojciech , Orbital landscapes for reductive 2e− activation of dihydrogen molecule, JOURNAL OF MOLECULAR MODELING, 2007, 13, s. 757-767
  44. Grochala Wojciech , Grochala Wojciech , Atypical compounds of gases, which have been called 'noble', CHEMICAL SOCIETY REVIEWS, 2007, 36, s. 1632-1655
  45. Maj Łukasz , Grochala Wojciech , Grochala Wojciech , Unprecedented flexibility of the >Ti=Si< group for the addition of H2, PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2007, 9, s. 2706-2712
  46. Grochala Wojciech , Grochala Wojciech , Stabilization of WVI in Nitride Environment via Acid/Base Reactions, and General Route to Layered Transition Metal Nitrides, Polish Journal of Chemistry, 2007, 81, s. 613-620
  47. Zając Jan , Batorski Dominik , Jak skłonić do udziału w badaniach internetowych: Zwiększanie realizacji próby, PSYCHOLOGIA SPOLECZNA, 2007, 2, s. 234-247
  48. Łopuszyński Michał , Majewski Jacek , Density Functional Studies of Nonlinear Elastic Properties for Zinc-Blende Nitrides, ACTA PHYSICA POLONICA A, 2007, 112, s. 443-447
  49. Łopuszyński Michał , Majewski Jacek , Ab initio calculations of third-order elastic constants and related properties for selected semiconductors, PHYSICAL REVIEW B, 2007, 76, s. 1-8
  50. Walewski Łukasz , Bała Piotr , Lesyng Bogdan , Steered Classical and Quantum Path-Integral Molecular Dynamics Simulations of Strongly Coupled Protons Motions in Porphycene W: From Computational Biophysics to Systems Biology (CBSB07), Proceedings of the NIC Workshop 2007 , Juelich, John von Neumann Institute for Computing, 2007
  51. Hallay-Suszek Marta , Grochowski Paweł , Lesyng Bogdan , Parameterization of the Potential Energy Surface of the Double Proton Transfer in Porphyrins W: From Computational Biophysics to Systems Biology (CBSB07), Proceedings of the NIC Workshop 2007 , Juelich, John von Neumann Institute for Computing, Juelich, 2007
  52. Foryś Urszula , Szymańska Zuzanna , Analisis of the heterotrophic - autorophic organisms model W: Krajowa Konferencja Zastosowan Matematyki w Biologii i Medycynie, Serpelice nad Bugiem, 18 - 22 wrzesnia 2007 , Serplice, 2007
  53. Bolikowski Łukasz , Gambin Anna , New Metrics for Phylogenies, FUNDAMENTA INFORMATICAE, 2007, 78, s. 199-216
  54. Łopuszyński Michał , Płaziak Joanna , Majewski Jacek , Theoretical Calculations of Cohesive and Electronic Properties of Quaternary AlGaInN Alloys, ACTA PHYSICA POLONICA A, 2007, 112, s. 449-454
  55. Trzcińska-Daneluti Agata , Górecki Adam , Czubaty Alicja , Kowalska-Loth Barbara , Girstun Agnieszka , Murawska Magdalena , Lesyng Bogdan , Staroń Krzysztof , Proteins Interacting with the Cap Region of Topoisomerase, JOURNAL OF MOLECULAR BIOLOGY, 2007, 369, s. 1098-1112
  56. Romiszewski Jerzy , Grochala Wojciech , Grochala Wojciech , Stolarczyk Leszek , Pressure-induced transformations of AgIIF2-towards an 'infinite layer' d9 material, JOURNAL OF PHYSICS-CONDENSED MATTER, 2007, 19, s. 1-13
  57. Górecki Adam , Górecki Adam , Trylska Joanna , Lesyng Bogdan , Causality and Correlation Analyses of Molecular Dynamics Simulation Data W: From Computational Biophysics to Systems Biology (CBSB07, John von Neumann Institute for Computing, Julich,Germany,2007) workshop august 2007 , Juelich, Germany, NIC Directors, 2007
  58. Gruziel Magdalena , Kmieć Piotr , Kmieć Piotr , Trylska Joanna , Lesyng Bogdan , Selected Microscopic and Mezoscopic Modeling Tools and Models - An Overview W: Molecular Materials with Specific Interactions - Modeling and Design , Dordrecht, The Netherlands, Springer, 2007
  59. Batorski Dominik , Grzelak Janusz , Sułek Antoni , Tymowska Katarzyna , Kotowska Irena , Szumlicz Tadeusz , Diagnoza społeczna 2007 ed. Czapiński Janusz , Panek Tomasz , , Warszawa, VizjaPress@IT, 2007
  60. Gambin Anna , Dutkowski Janusz , Karczmarski Jakub , Kluge Bogusław , Kowalczyk Krzysztof , Ostrowski Jerzy , Poznański Jarosław , Tiuryn Jerzy , Bakun M. , Dadlez Michał Lech , Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal of Mass Spectrometry, 2007, 260, s. 20-30